| Description |
1 online resource (xv, 615 pages) : illustrations |
| Series |
Series in mathematical biology and medicine ; v. 8 |
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Series in mathematical biology and medicine ; v. 8.
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| Contents |
1. Microarray analysis and regulatory networks. Microarray normalization using proportional abundance / S.A. Eschrich and C.A. Beam. Emerging pattern based subspace clustering of microarray gene expression data using mixture models / Y.B. Kim, J.H. Oh and J. Gao. Thermodynamic feasibility of metabolic networks / R. Nigam and S. Liang. Computational reconstruction of the carbon fixation pathway in Synechococcus sp. WH8102 / P. Dam [and others]. Modular neural networks and their application in exon prediction / Y. Pan and C.W. Sensen. Gene definition in different databases and its implication in microarray data interpretation / P. Wang [and others]. Exploring important issues in the implementation of gene set enrichment analysis / Y. Wang, S.J. Watson and F. Meng. Querying a database of regulatory elements / C. Yang [and others] -- 2. Machine learning and statistical analyses. Computational epidemiology : Bayesian disease surveillance / K. Abbas [and others]. Non-equilibrium fluctuations in a stochastic planktonic model : periodicity of phytoplankton bloom / R. Bhattacharyya and B. Mukhopadhyay. Fuzzy decoding in profile hidden Markov models for protein family identification / N.P. Bidargaddi, M. Chetty and J. Kamruzzaman. Screening potential Allele-frequency disequilibrium in data from affymetrix gene expression arrays / M. Dai [and others]. The application of self organizing maps for the analyses of DNA sequences / H. Dozono [and others]. Gaussian kernel width generation for support vector clustering / S.-H. Lee and K. Daniels. Serum proteomic pattern analysis for early cancer detection / Y. Liu. A linear solution for haplotype perfect phylogeny problem (extended abstract) / Y. Liu and C.-Q. Zhang. In Silico biology : haplotype inference, linkage disequilibrium analysis, and microarray-based gene selection techniques / T. Niu. The role of feature redundancy in tumor classification / C.H. Ooi, M. Chetty and I. Gondal. Clustering of eukaryotic orthologs based on sequence and domain similiarities using the Markov graph-flow algorithm / H. Ozer [and others]. Rapid drug target identification in microbial genomes -- an in silico approach with special reference to salmonella species / K.R. Sakharkar [and others]. A collimator neural network model for the classification of genetic data / M.S.B. Sehgal, I. Gondal and L. Dooley. Training set design for pattern discovery with applications to protein motif detection / Y. Sun [and others]. Gene selection by weighted Fisher criterion for multiclass prediction / J. Xuan [and others]. Sequential bifurcation approach to learning protein functional classes / M.Q. Yang, O.K. Ersoy and J.Y. Yang. Identification of contaminants in MALDI-TOF proteomics spectra via data mining / C.-Y. Yen, K.J. Cios and M.W. Duncan. Analysis of the effects of recombinant human Erythropoietin (EPO) on murine bone marrow populations using mixture modeling techniques / G. Zheng [and others]. Discovery of local protein sequence motifs using improved K-means clustering technique / W. Zhong [and others] -- 3. Biomolecular sequence and structure analysis. Predicting and characterizing metal-binding sites using support vector machines / L. Bobadilla, F. Niäno and G. Narasimhan. MTMM -- a Matlab toolbox for macromolecular modeling / F. Cui, T. Bibi and Z. Wu. Stabbing balls and simplifying proteins / O. Daescu and J. Luo. Step-wise mutations of mRNA sequences lead to progressive changes in calculated folding free energies / D. Digby and W. Seffens. Aligning sequences with non-fffine gap penalty : plains algorithm, a practical implementation, and its biological applications in comparative genomics / O. Gill, Y. Zhou and B. Mishra. Using the length constraints of helix to evaluate protein secondary structure prediction for helix / J. He and Y. Lu. An algorithm for finding similarities in protein active sites / K. Kupas, A. Ultsch and G. Klebe. Parallel tempering in Rosetta practice / Y. Li, C.E.M. Strauss and A. Gorin. An application of association rule mining to HLA-A*0201 epitope prediction / T. Milledge, G. Zheng and G. Narasimhan. A two-way searching algorithm for de novo peptide sequencing via tandem mass spectrometry / J.H. Oh, Y.B. Kim and J. Gao. An algorithm for determining Giycan structures from MS/MS spectra / B. Shan [and others]. Counting and enumeration of self-assembly pathways for symmetric macromolecular structures / M. Sitharam and M. Bâona. Improving multiple whole genomes alignment by considering rearrangement / J. Yang and J.S. Deogun. A filtering approach to splice site predictions in human genes / K. Yoon and S. Kwek. The construction of structural templates for the modeling of conserved protein domains / F. Zhang [and others] -- 4. Symmetry in sequences. Applications of hyper genetic code to bioinformatics / M.A. Jimenez-Montaäno. A Dodecahedron-based model of spatial representation of the canonical set of amino acids / V.A. Karasev, V.V. Luchinin and V.E. Stefanov. Molecular mappings : group theory, coding theory, and the emergence of replication / D.A. MacDâonaill. Symmetry and information in the genetic code / T. Negadi. The rules of degeneracy and segregations in genetic codes -- the chronocyclic conception and parallels with Mendel's laws / S.V. Petoukhov. Symbolic coding of amino acid and nucleotide properties / N. ùStambuk, P. Konjevoda and N. Gotovac. Analyzing patterns of tripeptides using statistical approach and neural network paradigms / R. Szabo [and others]. Molecular versus atomic information logic behind the genetic coding contents constrained by two evolutionary axes and the Fibonacci-Lucas sequence / C.M. Yang -- 5. Signal processing, image processing and visualization. Use of EEG recordings as valid measures of kinesthetic and visual imagery ability / J.G., Cremades [and others]. The merits of the third dimension for visual analysis of multiple anatomy ontologies / A.-S. Dadzie and A. Burger. Localization of brain activation through integration of optical topography and magnetic resonance imaging / M. Mourad, M. Adjouadi and I. Yaylali. A distributed multimedia database visualization within an immersive environment for bioinformatics / P.-E. Gros [and others] |
| Summary |
This unique volume presents major developments and trends in bioinformatics and its applications. Comprising high-quality scientific research papers and state-of-the-art survey articles, the book has been divided into five main sections : Microarray Analysis and Regulatory Networks; Machine Learning and Statistical Analysis; Biomolecular Sequence and Structure Analysis; Symmetry in Sequences; and Signal Processing, Image Processing and Visualization. The results of these investigations help the practicing biologist in many ways : in identifying unknown connections, in narrowing down possibilities for a search, in suggesting new hypotheses, designing new experiments, validating existing models or proposing new ones. It is an essential source of reference for researchers and graduate students in bioinformatics, computer science, mathematics, statistics, and biological sciences based on select papers from "The International Conference on Bioinformatics and Its Application" (ICBA), held December 16-19, 2004 in Fort Lauderdale, Florida, USA |
| Bibliography |
Includes bibliographical references and author index |
| Subject |
Bioinformatics -- Congresses
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Computational Biology
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COMPUTERS -- Bioinformatics.
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Bioinformatics
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| Genre/Form |
proceedings (reports)
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Conference papers and proceedings
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Conference papers and proceedings.
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Actes de congrès.
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| Form |
Electronic book
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| Author |
He, Matthew
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Narasimhan, Giri
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Petukhov, S. V. (Sergeĭ Valentinovich)
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World Scientific (Firm)
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| ISBN |
9789812702098 |
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9812702091 |
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