Title Systems biology and regulatory genomics : Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005 : revised selected papers / Eleazar Eskin [and others] (eds.)

Published Berlin ; New York : Springer, ©2007

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Description 1 online resource (x, 257 pages) : illustrations Series LNCS sublibrary. SL 8, Bioinformatics Lecture notes in computer science, 0302-9743 ; 4023. Lecture notes in bioinformatics LNCS sublibrary. SL 8, Bioinformatics. Lecture notes in computer science ; 4023. Lecture notes in computer science. Lecture notes in bioinformatics. Contents An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome -- The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways -- Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations -- Comparison of Protein-Protein Interaction Confidence Assignment Schemes -- Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs -- Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes -- Improvement of Computing Times in Boolean Networks Using Chi-square Tests -- Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements -- Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes -- Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels -- Improved Duplication Models for Proteome Network Evolution -- Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis -- Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data -- Topological Robustness of the Protein-Protein Interaction Networks -- A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data -- Probabilistic in Silico Prediction of Protein-Peptide Interactions -- Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences -- Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties -- An Interaction-Dependent Model for Transcription Factor Binding -- Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans, H. sapiens and A. thaliana -- A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism Summary This book constitutes the thoroughly refereed post-proceedings of two joint RECOMB 2005 satellite events - the First Annual Workshop on Systems Biology, RSB 2005, and the Second Annual Workshop on Regulatory Genomics, RRG 2005, held in San Diego, CA, USA in December 2005. The 21 revised full papers presented were carefully reviewed and selected for inclusion in the book. The papers address a broad variety of topics in systems biology and regulatory genomics including inference of gene regulatory and protein signaling networks, model prediction of drug mechanism, pathway mapping and evolution in protein interaction networks, multi-scale methods which bridge abstract and detailed models, systematic design of genome-scale experiments, modeling and recognition of regulatory elements, identification and modeling of cis-regulatory regions, modeling the structure and function of the regulatory region, and comparative genomics of regulation Analysis algoritmen algorithms computeranalyse computer analysis bioinformatics computertechnieken computer techniques wiskunde mathematics computerwetenschappen computer sciences levenswetenschappen life sciences gegevensstructuren data structures databasebeheer database management Information and Communication Technology (General) Informatie- en communicatietechnologie (algemeen) Bibliography Includes bibliographical references and index Notes Print version record Subject Bioinformatics -- Congresses Genetic regulation -- Data processing -- Congresses Systems biology. Gene regulatory networks. Genomics. Systems Biology Gene Regulatory Networks Genomics Genomics. Bioinformatics. Genetic regulation -- Data processing. Systems Biology. Gene Regulatory Networks. Informatique. Systems biology. Genomics. Gene regulatory networks. Bioinformatics. Genetic regulation -- Data processing. Genre/Form Conference papers and proceedings. Conference papers and proceedings. Actes de congrès. Form Electronic book Author Eskin, Eleazar. RECOMB Satellite Workshop on Systems Biology (2005 : San Diego, Calif.) RECOMB Satellite Workshop on Regulatory Genomics (2005 : San Diego, Calif.) ISBN 9783540485407 3540485406 9783540482932 3540482938 1280902124 9781280902123 6610902127 9786610902125

Other Titles RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics

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