Computational biology and bioinformatics : gene regulation / editor, Ka-Chun Wong, Department of Computer Science, City University of Hong Kong, Kowloon Tong, Hong Kong
Front Cover -- Preface -- List of Reviewers -- Contents -- Section 1 -- Genes -- Chapter 1 -- A Survey of the Computational Methods for Enhancers and Enhancer-target Predictions -- Chapter 2 -- Cormotif: An R Package for Jointly Detecting Differential Gene Expression in Multiple Studies -- Chapter 3 -- Granger Causality for Time Series Gene Expression Data -- Section 2 -- RNAs -- Chapter 4 -- RNA Sequencing and Gene Expression Regulation -- Chapter 5 -- Modern Technologies and Approaches for Decoding Non-Coding RNA-Mediated Biological Networks in Systems Biology and Their Applications -- Section 3 -- Proteins -- Chapter 6 -- Annotation of Hypothetical Proteins- a Functional Genomics Approach -- Chapter 7 -- Protein-Protein Functional Linkage Predictions: Bringing Regulation to Context -- Section 4 -- Epigenetics -- Chapter 8 -- Epigenomic Analysis of Chromatin Organization and DNA Methylation -- Chapter 9 -- Gene Body Methylation and Transcriptional Regulation: Statistical Modelling and More -- Section 5 -- Case Study -- Chapter 10 -- Computational Characterization of Non-small-cell Lung Cancer with EGFR Gene Mutations and its Applications to Drug Resistance Prediction -- Section 6 -- Advanced Topics -- Chapter 11 -- Quality Assurance in Genome-Scale Bioinformatics Analyses -- Chapter 12 -- Recent Computational Trends in Biological Sequence Alignment -- Chapter 13 -- State Estimation and Process Monitoring of Nonlinear Biological Phenomena Modeled by S-systems -- Chapter 14 -- Next-Generation Sequencing and Metagenomics -- Chapter 15 -- Metabolic Engineering: Dimensions and Applications -- Chapter 16 -- Methods to Identify Evolutionary Conserved Regulatory Elements Using Molecular Phylogenetics in Microbes -- Chapter 17 -- Improved Protein Model Ranking through Topological Assessment -- Back Cover
