Description |
1 online resource (xvi, 372 pages) |
Series |
Lecture notes in computer science, 0302-9743 ; 7262 |
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Lecture notes in bioinformatics |
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LNCS sublibrary. SL 8, Bioinformatics |
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Lecture notes in computer science ; 7262.
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Lecture notes in computer science. Lecture notes in bioinformatics.
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LNCS sublibrary. SL 8, Bioinformatics.
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Contents |
Protein Structure by Semidefinite Facial Reduction / Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz and Logan Donaldson, et al. -- Ancestry Inference in Complex Admixtures via Variable-Length Markov Chain Linkage Models / Sivan Bercovici, Jesse M. Rodriguez, Megan Elmore and Serafim Batzoglou -- Charge Group Partitioning in Biomolecular Simulation / Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled Elbassioni and Alpesh K. Malde, et al. -- Increased Methylation Variation in Epigenetic Domains across Cancer Types / Hector Corrada Bravo -- Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising / Dan F. DeBlasio, Travis J. Wheeler and John D. Kececioglu -- Quantifying the Dynamics of Coupled Networks of Switches and Oscillators / Matthew R. Francis and Elana J. Fertig -- lobSTR: A Short Tandem Repeat Profiler for Personal Genomes / Melissa Gymrek, David Golan, Saharon Rosset and Yaniv Erlich -- Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data / Dan He, Buhm Han and Eleazar Eskin |
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Ballast: A Ball-Based Algorithm for Structural Motifs / Lu He, Fabio Vandin, Gopal Pandurangan and Chris Bailey-Kellogg -- Evolution of Genome Organization by Duplication and Loss: An Alignment Approach / Patrick Holloway, Krister Swenson, David Ardell and Nadia El-Mabrouk -- LoopWeaver -- Loop Modeling by the Weighted Scaling of Verified Proteins / Daniel Holtby, Shuai Cheng Li and Ming Li -- A Robust Method for Transcript Quantification with RNA-seq Data / Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod and Derek Y. Chiang, et al. -- Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics / Marcus Kinsella and Vineet Bafna -- TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq / Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky and Gene E. Robinson, et al. -- Synthetic Sequence Design for Signal Location Search / Yaw-Ling Lin, Charles Ward and Steven Skiena -- The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation / Marc A. Marti-Renom |
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Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing / Andrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab Shah and Colin Collins, et al. -- Network-Based Prediction and Analysis of HIV Dependency Factors / T.M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler and Michael G. Katze -- Structure-Guided Deimmunization of Therapeutic Proteins / Andrew S. Parker, Karl E. Griswold and Chris Bailey-Kellogg -- Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA Structures / Dmitri Pervouchine, Ekaterina Khrameeva, Marina Pichugina, Olexii Nikolaienko and Mikhail Gelfand, et al. -- Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly / Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler and Pavel A. Pevzner, et al. -- Finding Maximum Colorful Subtrees in Practice / Imran Rauf, Florian Rasche, François Nicolas and Sebastian Böcker -- Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis / Sebastien Roch and Sagi Snir |
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RESQUE: Network Reduction Using Semi-Markov Random Walk Scores for Efficient Querying of Biological Networks (Extended Abstract) / Sayed Mohammad Ebrahim Sahraeian and Byung-Jun Yoon -- Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies / Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman and Teresa M. Przytycka -- A Model for Biased Fractionation after Whole Genome Duplication / David Sankoff, Chunfang Zheng and Baoyong Wang -- Exact Pattern Matching for RNA Structure Ensembles / Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit and Gad M. Landau, et al. -- Reconstructing Boolean Models of Signaling / Roded Sharan and Richard M. Karp -- Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract / Kai Song, Jie Ren, Zhiyuan Zhai, Xuemei Liu and Minghua Deng, et al. -- Differential Oestrogen Receptor Binding is Associated with Clinical Outcome in Breast Cancer / Rory Stark -- Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem / Nurcan Tuncbag, Alfredo Braunstein, Andrea Pagnani, Shao-Shan Carol Huang and Jennifer Chayes, et al |
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Function-Function Correlated Multi-Label Protein Function Prediction over Interaction Networks / Hua Wang, Heng Huang and Chris Ding -- Predicting Protein-Protein Interactions from Multimodal Biological Data Sources via Nonnegative Matrix Tri-Factorization / Hua Wang, Heng Huang, Chris Ding and Feiping Nie -- CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping / Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin and Eleazar Eskin -- Structure-Based Whole Genome Realignment Reveals Many Novel Non-coding RNAs / Sebastian Will, Michael Yu and Bonnie Berger -- Probabilistic Inference of Viral Quasispecies Subject to Recombination / Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth and Eran Halperin, et al. -- Simultaneously Learning DNA Motif along with Its Position and Sequence Rank Preferences through EM Algorithm / ZhiZhuo Zhang, Cheng Wei Chang, Willy Hugo, Edwin Cheung and Wing-Kin Sung |
Summary |
This book constitutes the refereed proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2012, held in Barcelona, Spain, in April 2012. The 31 revised full papers presented together with 5 keynote lectures were carefully reviewed and selected from 200 submissions. The papers feature current research in all areas of computational molecular biology, including: molecular sequence analysis; recognition of genes and regulatory elements; molecular evolution; protein structure; structural genomics; analysis of gene expression; biological networks; sequencing and genotyping technologies; drug design; probabilistic and combinatorial algorithms; systems biology; computational proteomics; structural and functional genomics; information systems for computational biology and imaging |
Analysis |
Computer science |
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Data structures (Computer science) |
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Computer software |
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Database management |
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Artificial intelligence |
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Bioinformatics |
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Algorithm Analysis and Problem Complexity |
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Computational Biology/Bioinformatics |
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Computation by Abstract Devices |
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algoritmen |
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algorithms |
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computeranalyse |
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computer analysis |
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computational science |
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kunstmatige intelligentie |
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databasebeheer |
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computerwetenschappen |
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computer sciences |
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gegevensstructuren |
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data structures |
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Information and Communication Technology (General) |
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Informatie- en communicatietechnologie (algemeen) |
Bibliography |
Includes bibliographical references and author index |
In |
Springer eBooks |
Subject |
Molecular biology -- Mathematics -- Congresses
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Molecular biology -- Statistical methods -- Congresses
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Computational biology -- Congresses
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Bioinformatics -- Congresses
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Artificial intelligence.
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software.
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computer science.
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data processing.
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artificial intelligence.
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Informatique.
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Bioinformatics
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Computational biology
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Molecular biology -- Mathematics
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Molecular biology -- Statistical methods
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Genre/Form |
Conference papers and proceedings
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Software.
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Form |
Electronic book
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Author |
Chor, Benny
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ISBN |
9783642296277 |
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3642296270 |
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3642296262 |
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9783642296260 |
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