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Title Data mining for systems biology : methods and protocols / edited by Hiroshi Mamitsuka
Edition Second edition
Published New York : Humana Press : Springer, [2018]


Description 1 online resource (xi, 243 pages) : illustrations (some color)
Series Methods in molecular biology ; 1807
Methods in molecular biology (Clifton, N.J.) ; v. 1807.
Contents Identifying bacterial strains from sequencing data / Tommi Mäklin, Jukka Corander, and Antti Honkela -- MetaVW : large-scale machine learning for metagenomics sequence classification / Kévin Vervier, Pierre Mahé, and Jean-Philippe Vert -- Online interactive microbial classification and geospatial distributional analysis using BioAtlas / Jesper Lund, Qihua Tan, and Jan Baumbach -- Generative models for quantification of DNA modifications / Tarmo Äijö, Richard Bonneau, and Harri Lähdesmäki -- DiMmer : discovery of differentially methylated regions in epigenome-wide association study (EWAS) data / Tobias Frisch, Jonatan Gøttcke, Richard Röttger, Qihua Tan, and Jan Baumbach -- Implementing a transcription factor interaction prediction system using the GenoMetric query language / Stefano Perna, Arif Canakoglu, Pietro Pinoli, Stefano Ceri, and Limsoon Wong -- Multiple testing tool to detect combinatorial effects in biology / Aika Terada and Koji Tsuda -- SiBIC : a tool for generating a network of biclusters captured by maximal frequent itemset mining / Kei-ichiro Takahashi, David A. duVerle, Sohiya Yotsukura, Ichigaku Takigawa, and Hiroshi Mamitsuka -- Computing and visualizing gene function similarity and coherence with NaviGO / Ziyun Ding, Qing Wei, and Daisuke Kihara -- Analyzing glycan-binding profiles using weighted multiple alignment of trees / Kiyoko F. Aoki-Kinoshita -- Analysis of fluxomic experiments with principal metabolic FluxMode analysis / Sahely Bhadra and Juho Rousu -- Analyzing tandem mass spectra using the DRIP toolkit : training, searching, and post-processing / John T. Halloran -- Sparse modeling to analyze drug-target interaction networks / Yoshihiro Yamanishi -- DrugE-rank : predicting drug-target interactions by learning to rank / Jieyao Deng, Qingjun Yuan, Hiroshi Mamitsuka, and Shanfeng Zhu -- MeSHLabeler and DeepMeSH : recent progress in large-scale MeSH indexing / Shengwen Peng, Hiroshi Mamitsuka, and Shanfeng Zhu -- Disease gene classification with metagraph representations / Sezin Kircali Ata, Yuan Fang, Min Wu, Xiao-Li Li, and Xiaokui Xiao -- Inferring antimicrobial resistance from pathogen genomes in KEGG / Minoru Kanehisa
Bibliography Includes bibliographical references and index
Subject Systems biology -- Laboratory manuals
Data mining -- Laboratory manuals
Systems Biology -- methods
Data Mining -- methods
Sequence Analysis -- methods. (dnlm)d017421q000379
Molecular biology.
Science -- Life Sciences -- Anatomy & Physiology.
Data mining
Systems biology
Genre/Form Laboratory manuals
Laboratory manuals.
Manuels de laboratoire.
Form Electronic book
Author Mamitsuka, Hiroshi, editor
ISBN 9781493985616